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STRBP spermatid perinuclear RNA binding protein [ Myotis lucifugus (little brown bat) ]

Gene ID: 102442583, updated on 30-Mar-2024

Summary

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Gene symbol
STRBP
Gene description
spermatid perinuclear RNA binding protein
See related
Ensembl:ENSMLUG00000003882
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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See STRBP in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871221.1 (2333514..2460254)

NW_005871221.1Genomic Context describing neighboring genes Neighboring gene DENN domain containing 1A Neighboring gene S-phase kinase-associated protein 1 pseudogene Neighboring gene crumbs cell polarity complex component 2 Neighboring gene transgelin-2 Neighboring gene RAB GTPase activating protein 1 Neighboring gene G protein-coupled receptor 21 Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene zinc finger and BTB domain containing 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871221 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatid perinuclear RNA-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871221.1 Reference Myoluc2.0

    Range
    2333514..2460254
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023760157.1 → XP_023615925.1  spermatid perinuclear RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    G1P163
    Conserved Domains (2) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif

  2. XM_014462215.2 → XP_014317701.1  spermatid perinuclear RNA-binding protein isoform X2

    UniProtKB/TrEMBL
    G1P163
    Conserved Domains (2) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif

  3. XM_023760158.1 → XP_023615926.1  spermatid perinuclear RNA-binding protein isoform X3

    UniProtKB/TrEMBL
    G1P163
    Conserved Domains (3) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    cd19909
    Location:384 → 467
    DSRM_STRBP_rpt1; first double-stranded RNA binding motif of spermatid perinuclear RNA-binding protein (STRBP) and similar proteins
    cd19911
    Location:512 → 575
    DSRM_STRBP_rpt2; second double-stranded RNA binding motif of spermatid perinuclear RNA-binding protein (STRBP) and similar proteins

  4. XM_023760159.1 → XP_023615927.1  spermatid perinuclear RNA-binding protein isoform X4

    UniProtKB/TrEMBL
    G1P163
    Conserved Domains (2) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif

  5. XM_023760161.1 → XP_023615929.1  spermatid perinuclear RNA-binding protein isoform X5

    UniProtKB/TrEMBL
    G1P163
    Conserved Domains (2) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif

  6. XM_023760163.1 → XP_023615931.1  spermatid perinuclear RNA-binding protein isoform X7

    UniProtKB/TrEMBL
    G1P163
    Conserved Domains (2) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif

  7. XM_023760165.1 → XP_023615933.1  spermatid perinuclear RNA-binding protein isoform X10

    UniProtKB/TrEMBL
    G1P163
    Conserved Domains (3) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    cd19909
    Location:384 → 467
    DSRM_STRBP_rpt1; first double-stranded RNA binding motif of spermatid perinuclear RNA-binding protein (STRBP) and similar proteins
    cd19911
    Location:512 → 575
    DSRM_STRBP_rpt2; second double-stranded RNA binding motif of spermatid perinuclear RNA-binding protein (STRBP) and similar proteins

  8. XM_023760164.1 → XP_023615932.1  spermatid perinuclear RNA-binding protein isoform X9

    UniProtKB/TrEMBL
    G1P163
    Conserved Domains (2) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif

  9. XM_014462217.2 → XP_014317703.1  spermatid perinuclear RNA-binding protein isoform X7

    UniProtKB/TrEMBL
    G1P163
    Conserved Domains (2) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif

  10. XM_014462218.2 → XP_014317704.1  spermatid perinuclear RNA-binding protein isoform X8

    UniProtKB/TrEMBL
    G1P163
    Conserved Domains (2) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif

  11. XM_023760162.1 → XP_023615930.1  spermatid perinuclear RNA-binding protein isoform X6

    UniProtKB/TrEMBL
    G1P163
    Related
    ENSMLUP00000003538.2, ENSMLUT00000003882.2
    Conserved Domains (4) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    pfam17228
    Location:608 → 667
    SGP; Sulphur globule protein
    cd19909
    Location:384 → 467
    DSRM_STRBP_rpt1; first double-stranded RNA binding motif of spermatid perinuclear RNA-binding protein (STRBP) and similar proteins
    cd19911
    Location:512 → 575
    DSRM_STRBP_rpt2; second double-stranded RNA binding motif of spermatid perinuclear RNA-binding protein (STRBP) and similar proteins

RNA

  1. XR_002831089.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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