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RBPJ recombination signal binding protein for immunoglobulin kappa J region [ Myotis lucifugus (little brown bat) ]

Gene ID: 102441013, updated on 30-Mar-2024

Summary

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Gene symbol
RBPJ
Gene description
recombination signal binding protein for immunoglobulin kappa J region
See related
Ensembl:ENSMLUG00000017187
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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See RBPJ in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871160.1 (680067..785988, complement)

NW_005871160.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 19 Neighboring gene F-box only protein 31 pseudogene Neighboring gene cholecystokinin A receptor Neighboring gene adenylate kinase isoenzyme 6-like Neighboring gene small integral membrane protein 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871160 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MAML1-RBP-Jkappa- ICN1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
recombining binding protein suppressor of hairless

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871160.1 Reference Myoluc2.0

    Range
    680067..785988 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023757727.1 → XP_023613495.1  recombining binding protein suppressor of hairless isoform X4

    UniProtKB/TrEMBL
    G1PWA9
    Conserved Domains (3) summary
    cd01176
    Location:319 → 415
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:175 → 297
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:17 → 142
    LAG1-DNAbind; LAG1, DNA binding

  2. XM_023757726.1 → XP_023613494.1  recombining binding protein suppressor of hairless isoform X4

    UniProtKB/TrEMBL
    G1PWA9
    Conserved Domains (3) summary
    cd01176
    Location:319 → 415
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:175 → 297
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:17 → 142
    LAG1-DNAbind; LAG1, DNA binding

  3. XM_023757729.1 → XP_023613497.1  recombining binding protein suppressor of hairless isoform X6

    UniProtKB/TrEMBL
    G1PWA9
    Conserved Domains (3) summary
    cd01176
    Location:275 → 371
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:104 → 253
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:1 → 102
    LAG1-DNAbind; LAG1, DNA binding

  4. XM_006093263.3 → XP_006093325.1  recombining binding protein suppressor of hairless isoform X1

    See identical proteins and their annotated locations for XP_006093325.1

    UniProtKB/TrEMBL
    G1PWA9
    Conserved Domains (3) summary
    cd01176
    Location:350 → 446
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:179 → 328
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:48 → 177
    LAG1-DNAbind; LAG1, DNA binding

  5. XM_023757724.1 → XP_023613492.1  recombining binding protein suppressor of hairless isoform X3

    UniProtKB/TrEMBL
    G1PWA9
    Conserved Domains (3) summary
    cd01176
    Location:336 → 432
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:192 → 314
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:34 → 159
    LAG1-DNAbind; LAG1, DNA binding

  6. XM_023757725.1 → XP_023613493.1  recombining binding protein suppressor of hairless isoform X3

    UniProtKB/TrEMBL
    G1PWA9
    Conserved Domains (3) summary
    cd01176
    Location:336 → 432
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:192 → 314
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:34 → 159
    LAG1-DNAbind; LAG1, DNA binding

  7. XM_023757728.1 → XP_023613496.1  recombining binding protein suppressor of hairless isoform X5

    UniProtKB/TrEMBL
    G1PWA9
    Conserved Domains (3) summary
    cd01176
    Location:315 → 411
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:171 → 293
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:13 → 138
    LAG1-DNAbind; LAG1, DNA binding

  8. XM_023757723.1 → XP_023613491.1  recombining binding protein suppressor of hairless isoform X2

    UniProtKB/TrEMBL
    G1PWA9
    Related
    ENSMLUP00000015672.2, ENSMLUT00000017192.2
    Conserved Domains (3) summary
    cd01176
    Location:342 → 438
    IPT_RBP-Jkappa; IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known ...
    pfam09270
    Location:171 → 320
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:40 → 169
    LAG1-DNAbind; LAG1, DNA binding
Nucleotide Protein
Heading Accession and Version

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