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HBP1 HMG-box transcription factor 1 [ Myotis lucifugus (little brown bat) ]

Gene ID: 102438165, updated on 30-Mar-2024

Summary

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Gene symbol
HBP1
Gene description
HMG-box transcription factor 1
See related
Ensembl:ENSMLUG00000012425
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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See HBP1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871066.1 (8684198..8718083, complement)

NW_005871066.1Genomic Context describing neighboring genes Neighboring gene component of oligomeric golgi complex 5 Neighboring gene G protein-coupled receptor 22 Neighboring gene 40S ribosomal protein S7 pseudogene Neighboring gene small nucleolar RNA SNORA36 family Neighboring gene protein kinase cAMP-dependent type II regulatory subunit beta Neighboring gene eukaryotic translation initiation factor 3 subunit D-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871066 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HMG box-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871066.1 Reference Myoluc2.0

    Range
    8684198..8718083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023751075.1 → XP_023606843.1  HMG box-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    G1PKI6
    Conserved Domains (2) summary
    cd01388
    Location:430 → 501
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    cl22470
    Location:223 → 337
    AXH; Ataxin-1 and HBP1 module (AXH)

  2. XM_006085378.3 → XP_006085440.1  HMG box-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006085440.1

    UniProtKB/TrEMBL
    G1PKI6
    Conserved Domains (2) summary
    smart00536
    Location:223 → 349
    AXH; domain in Ataxins and HMG containing proteins
    cd01388
    Location:442 → 513
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  3. XM_006085379.3 → XP_006085441.1  HMG box-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006085441.1

    UniProtKB/TrEMBL
    G1PKI6
    Related
    ENSMLUP00000011315.2, ENSMLUT00000012426.2
    Conserved Domains (2) summary
    smart00536
    Location:213 → 339
    AXH; domain in Ataxins and HMG containing proteins
    cd01388
    Location:432 → 503
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
Nucleotide Protein
Heading Accession and Version

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