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TMTC4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Myotis lucifugus (little brown bat) ]

Gene ID: 102435162, updated on 30-Mar-2024

Summary

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Gene symbol
TMTC4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
See related
Ensembl:ENSMLUG00000013072
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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See TMTC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871411.1 (249185..308104)

NW_005871411.1Genomic Context describing neighboring genes Neighboring gene lupus La protein homolog Neighboring gene 60S ribosomal protein L9 pseudogene Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene 39S ribosomal protein L47, mitochondrial pseudogene Neighboring gene propionyl-CoA carboxylase subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871411 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 4
Names
transmembrane and tetratricopeptide repeat containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871411.1 Reference Myoluc2.0

    Range
    249185..308104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014466813.2 → XP_014322299.1  transmembrane and TPR repeat-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    G1PLZ6
    Related
    ENSMLUP00000011904.2, ENSMLUT00000013087.2
    Conserved Domains (7) summary
    smart00028
    Location:582 → 615
    TPR; Tetratricopeptide repeats
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:548 → 581
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:480 → 513
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:290 → 364
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:479 → 545
    TPR_11; TPR repeat
    pfam13431
    Location:502 → 535
    TPR_17; Tetratricopeptide repeat

  2. XM_006101454.3 → XP_006101516.1  transmembrane and TPR repeat-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    G1PLZ6
    Conserved Domains (7) summary
    smart00028
    Location:582 → 615
    TPR; Tetratricopeptide repeats
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:548 → 581
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:480 → 513
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:290 → 364
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:479 → 545
    TPR_11; TPR repeat
    pfam13431
    Location:502 → 535
    TPR_17; Tetratricopeptide repeat

  3. XM_014466812.2 → XP_014322298.1  transmembrane and TPR repeat-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    G1PLZ6
    Conserved Domains (7) summary
    smart00028
    Location:582 → 615
    TPR; Tetratricopeptide repeats
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:548 → 581
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:480 → 513
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:290 → 364
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:479 → 545
    TPR_11; TPR repeat
    pfam13431
    Location:502 → 535
    TPR_17; Tetratricopeptide repeat

  4. XM_023764921.1 → XP_023620689.1  transmembrane and TPR repeat-containing protein 4 isoform X2

    Conserved Domains (3) summary
    COG0457
    Location:479 → 667
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:292 → 364
    DUF1736; Domain of unknown function (DUF1736)

  5. XM_023764922.1 → XP_023620690.1  transmembrane and TPR repeat-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    G1PLZ6
    Conserved Domains (3) summary
    sd00006
    Location:360 → 388
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:172 → 244
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:348 → 607
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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