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SMPDL3B sphingomyelin phosphodiesterase acid like 3B [ Myotis lucifugus (little brown bat) ]

Gene ID: 102429221, updated on 30-Mar-2024

Summary

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Gene symbol
SMPDL3B
Gene description
sphingomyelin phosphodiesterase acid like 3B
See related
Ensembl:ENSMLUG00000026678
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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See SMPDL3B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871245.1 (1460656..1477158, complement)

NW_005871245.1Genomic Context describing neighboring genes Neighboring gene EYA transcriptional coactivator and phosphatase 3 Neighboring gene 60S ribosomal protein L5-like Neighboring gene uncharacterized LOC106698569 Neighboring gene XK related 8 Neighboring gene replication protein A2 Neighboring gene small nucleolar RNA SNORA26 Neighboring gene thymocyte selection associated family member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871245 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871245.1 Reference Myoluc2.0

    Range
    1460656..1477158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006097268.3 → XP_006097330.2  acid sphingomyelinase-like phosphodiesterase 3b isoform X1

    Conserved Domains (1) summary
    cd00842
    Location:129 → 427
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

  2. XM_023760994.1 → XP_023616762.1  acid sphingomyelinase-like phosphodiesterase 3b isoform X3

    UniProtKB/TrEMBL
    G1QCT9
    Related
    ENSMLUP00000021522.1, ENSMLUT00000022879.1
    Conserved Domains (1) summary
    cd00842
    Location:23 → 321
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

  3. XM_023760995.1 → XP_023616763.1  acid sphingomyelinase-like phosphodiesterase 3b isoform X3

    UniProtKB/TrEMBL
    G1QCT9
    Conserved Domains (1) summary
    cd00842
    Location:23 → 321
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain

  4. XM_023760993.1 → XP_023616761.1  acid sphingomyelinase-like phosphodiesterase 3b isoform X2

    Conserved Domains (1) summary
    cd00842
    Location:129 → 427
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

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