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EIF2D eukaryotic translation initiation factor 2D [ Myotis lucifugus (little brown bat) ]

Gene ID: 102429015, updated on 30-Mar-2024

Summary

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Gene symbol
EIF2D
Gene description
eukaryotic translation initiation factor 2D
See related
Ensembl:ENSMLUG00000001410
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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See EIF2D in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871193.1 (1843627..1876026, complement)

NW_005871193.1Genomic Context describing neighboring genes Neighboring gene inhibitor of nuclear factor kappa B kinase subunit epsilon Neighboring gene Ras association domain family member 5 Neighboring gene dual specificity tyrosine phosphorylation regulated kinase 3 Neighboring gene uncharacterized LOC111827248

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871193 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in formation of translation preinitiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 2D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871193.1 Reference Myoluc2.0

    Range
    1843627..1876026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023759004.1 → XP_023614772.1  eukaryotic translation initiation factor 2D isoform X5

    Conserved Domains (2) summary
    cd11608
    Location:379 → 463
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cl25957
    Location:1 → 66
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]

  2. XM_023759007.1 → XP_023614775.1  eukaryotic translation initiation factor 2D isoform X5

    Conserved Domains (2) summary
    cd11608
    Location:379 → 463
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cl25957
    Location:1 → 66
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]

  3. XM_023759005.1 → XP_023614773.1  eukaryotic translation initiation factor 2D isoform X5

    Conserved Domains (2) summary
    cd11608
    Location:379 → 463
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cl25957
    Location:1 → 66
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]

  4. XM_023759006.1 → XP_023614774.1  eukaryotic translation initiation factor 2D isoform X5

    Conserved Domains (2) summary
    cd11608
    Location:379 → 463
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cl25957
    Location:1 → 66
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]

  5. XM_023759003.1 → XP_023614771.1  eukaryotic translation initiation factor 2D isoform X5

    Conserved Domains (2) summary
    cd11608
    Location:379 → 463
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cl25957
    Location:1 → 66
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]

  6. XM_014460933.2 → XP_014316419.1  eukaryotic translation initiation factor 2D isoform X2

    Conserved Domains (3) summary
    cd11610
    Location:6 → 81
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    COG2016
    Location:7 → 178
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]
    cl00607
    Location:68 → 174
    PUA; PUA domain

  7. XM_006094856.3 → XP_006094918.1  eukaryotic translation initiation factor 2D isoform X1

    See identical proteins and their annotated locations for XP_006094918.1

    UniProtKB/TrEMBL
    G1NVJ2
    Related
    ENSMLUP00000001293.2, ENSMLUT00000001410.2
    Conserved Domains (4) summary
    cd11608
    Location:491 → 575
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cd11610
    Location:6 → 81
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    COG2016
    Location:7 → 178
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]
    cl00607
    Location:68 → 174
    PUA; PUA domain

  8. XM_014460937.2 → XP_014316423.1  eukaryotic translation initiation factor 2D isoform X4

    Conserved Domains (3) summary
    cd11608
    Location:413 → 497
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cd11610
    Location:6 → 63
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    smart00359
    Location:56 → 97
    PUA; Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase

  9. XM_014460935.2 → XP_014316421.1  eukaryotic translation initiation factor 2D isoform X3

    Conserved Domains (4) summary
    cd11608
    Location:441 → 525
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cd11610
    Location:6 → 81
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    COG2016
    Location:7 → 178
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]
    cl00607
    Location:68 → 174
    PUA; PUA domain
Nucleotide Protein
Heading Accession and Version

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