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ITGA6 integrin subunit alpha 6 [ Myotis lucifugus (little brown bat) ]

Gene ID: 102426340, updated on 30-Mar-2024

Summary

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Gene symbol
ITGA6
Gene description
integrin subunit alpha 6
See related
Ensembl:ENSMLUG00000005550
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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See ITGA6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871053.1 (9749045..9820013, complement)

NW_005871053.1Genomic Context describing neighboring genes Neighboring gene Rap guanine nucleotide exchange factor 4 Neighboring gene uncharacterized LOC111823442 Neighboring gene pyruvate dehydrogenase kinase 1 Neighboring gene distal-less homeobox 2 Neighboring gene distal-less homeobox 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871053 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871053.1 Reference Myoluc2.0

    Range
    9749045..9820013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014468090.2 → XP_014323576.1  integrin alpha-6 isoform X1

    UniProtKB/TrEMBL
    G1P513
    Conserved Domains (2) summary
    smart00191
    Location:374 → 425
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:464 → 940
    Integrin_alpha2; Integrin alpha

  2. XM_023744848.1 → XP_023600616.1  integrin alpha-6 isoform X3

    UniProtKB/TrEMBL
    G1P513
    Conserved Domains (2) summary
    smart00191
    Location:342 → 393
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:432 → 908
    Integrin_alpha2; Integrin alpha

  3. XM_014468102.2 → XP_014323588.1  integrin alpha-6 isoform X4

    UniProtKB/TrEMBL
    G1P513
    Conserved Domains (2) summary
    smart00191
    Location:260 → 311
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:350 → 826
    Integrin_alpha2; Integrin alpha

  4. XM_014468099.2 → XP_014323585.1  integrin alpha-6 isoform X2

    UniProtKB/TrEMBL
    G1P513
    Related
    ENSMLUP00000005073.2, ENSMLUT00000005557.2
    Conserved Domains (3) summary
    smart00191
    Location:374 → 425
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam00357
    Location:1039 → 1053
    Integrin_alpha; Integrin alpha cytoplasmic region
    pfam08441
    Location:464 → 940
    Integrin_alpha2; Integrin alpha
Nucleotide Protein
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