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TBP TATA-box binding protein [ Myotis lucifugus (little brown bat) ]

Gene ID: 102418215, updated on 30-Mar-2024

Summary

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Gene symbol
TBP
Gene description
TATA-box binding protein
See related
Ensembl:ENSMLUG00000014582
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis lucifugus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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See TBP in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Myoluc2.0 (GCF_000147115.1) Unplaced Scaffold NW_005871781.1 (324536..335258)

NW_005871781.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 120 member B Neighboring gene proteasome 20S subunit beta 1 Neighboring gene uncharacterized LOC106694973 Neighboring gene uncharacterized LOC102419166

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871781 Unplaced Scaffold Reference Myoluc2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA-box-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis lucifugus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Myoluc2.0

Genomic

  1. NW_005871781.1 Reference Myoluc2.0

    Range
    324536..335258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023746805.1 → XP_023602573.1  TATA-box-binding protein isoform X1

    Conserved Domains (1) summary
    PLN00062
    Location:141 → 371
    PLN00062; TATA-box-binding protein; Provisional

  2. XM_006105903.3 → XP_006105965.1  TATA-box-binding protein isoform X2

    UniProtKB/TrEMBL
    G1PQC9
    Related
    ENSMLUP00000013272.2, ENSMLUT00000014587.2
    Conserved Domains (2) summary
    PLN00062
    Location:141 → 317
    PLN00062; TATA-box-binding protein; Provisional
    cd04516
    Location:141 → 314
    TBP_eukaryotes; eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation ...

  3. XM_023746808.1 → XP_023602576.1  TATA-box-binding protein isoform X5

    Conserved Domains (1) summary
    cl08263
    Location:141 → 258
    TBP_TLF; TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: ...

  4. XM_023746806.1 → XP_023602574.1  TATA-box-binding protein isoform X3

    Conserved Domains (1) summary
    cl08263
    Location:141 → 315
    TBP_TLF; TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: ...

  5. XM_023746807.1 → XP_023602575.1  TATA-box-binding protein isoform X4

    Conserved Domains (1) summary
    cl08263
    Location:141 → 204
    TBP_TLF; TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: ...
Nucleotide Protein
Heading Accession and Version

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