U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PSAP prosaposin [ Bubalus bubalis (water buffalo) ]

Gene ID: 102416033, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
PSAP
Gene description
prosaposin
See related
EnsemblRapid:ENSBALG00030003141
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PSAP in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 4 NC_059160.1 (147114319..147147888, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 4 NC_058346.1 (145842469..145857696, complement)

Chromosome 4 - NC_059160.1Genomic Context describing neighboring genes Neighboring gene cadherin related 23 Neighboring gene chromosome 4 C10orf105 homolog Neighboring gene V-set immunoregulatory receptor Neighboring gene uncharacterized LOC123465729 Neighboring gene uncharacterized LOC102392882 Neighboring gene carbohydrate sulfotransferase 3 Neighboring gene SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
prosaposin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059160.1 Reference NDDB_SH_1 Primary Assembly

    Range
    147114319..147147888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045165550.1 → XP_045021485.1  prosaposin isoform X2

    Conserved Domains (3) summary
    smart00162
    Location:21 → 54
    SAPA; Saposin/surfactant protein-B A-type DOMAIN
    smart00741
    Location:316 → 391
    SapB; Saposin (B) Domains
    pfam02199
    Location:495 → 527
    SapA; Saposin A-type domain

  2. XM_045165549.1 → XP_045021484.1  prosaposin isoform X1

    Related
    ENSBALP00030005754.1, ENSBALT00030008837.1
    Conserved Domains (3) summary
    smart00162
    Location:21 → 54
    SAPA; Saposin/surfactant protein-B A-type DOMAIN
    smart00741
    Location:317 → 392
    SapB; Saposin (B) Domains
    pfam02199
    Location:496 → 528
    SapA; Saposin A-type domain

  3. XM_045165551.1 → XP_045021486.1  prosaposin isoform X3

    Related
    ENSBALP00030005773.1, ENSBALT00030008874.1
    Conserved Domains (3) summary
    smart00162
    Location:21 → 54
    SAPA; Saposin/surfactant protein-B A-type DOMAIN
    smart00741
    Location:314 → 389
    SapB; Saposin (B) Domains
    pfam02199
    Location:493 → 525
    SapA; Saposin A-type domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.