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ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102415350, updated on 10-Mar-2024

Summary

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Gene symbol
ST8SIA2
Gene description
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
See related
EnsemblRapid:ENSBALG00030010698
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See ST8SIA2 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
6
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 20 NC_059176.1 (55803757..55876070)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 20 NC_058362.1 (54942837..55015159)

Chromosome 20 - NC_059176.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123330738 Neighboring gene uncharacterized LOC123330733 Neighboring gene uncharacterized LOC123330719 Neighboring gene uncharacterized LOC123465197 Neighboring gene 60S ribosomal protein L36-like Neighboring gene family with sequence similarity 174 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-2,8-sialyltransferase 8B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059176.1 Reference NDDB_SH_1 Primary Assembly

    Range
    55803757..55876070
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006078752.4 → XP_006078814.3  alpha-2,8-sialyltransferase 8B

    Related
    ENSBALP00030020112.1, ENSBALT00030029824.1
    Conserved Domains (1) summary
    pfam00777
    Location:109 → 368
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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