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ACSL1 acyl-CoA synthetase long chain family member 1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102414095, updated on 10-Mar-2024

Summary

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Gene symbol
ACSL1
Gene description
acyl-CoA synthetase long chain family member 1
See related
EnsemblRapid:ENSBALG00030000972
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See ACSL1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
23
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 1 NC_059157.1 (30307813..30373197)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 1 NC_058343.1 (30259002..30324384)

Chromosome 1 - NC_059157.1Genomic Context describing neighboring genes Neighboring gene helt bHLH transcription factor Neighboring gene voltage-dependent anion-selective channel protein 3-like Neighboring gene uncharacterized LOC123332378 Neighboring gene centromere protein U Neighboring gene transfer RNA cysteine (anticodon GCA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arachidonate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-chain fatty-acyl-CoA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
long-chain-fatty-acid--CoA ligase 1
Names
long-chain fatty acid-CoA ligase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059157.1 Reference NDDB_SH_1 Primary Assembly

    Range
    30307813..30373197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006075113.3 → XP_006075175.1  long-chain-fatty-acid--CoA ligase 1 isoform X2

    See identical proteins and their annotated locations for XP_006075175.1

    UniProtKB/TrEMBL
    A0A097P9M4
    Related
    ENSBALP00030001774.1, ENSBALT00030002677.1
    Conserved Domains (2) summary
    PLN02736
    Location:87 → 697
    PLN02736; long-chain acyl-CoA synthetase
    cd05927
    Location:117 → 694
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  2. XM_006075115.3 → XP_006075177.1  long-chain-fatty-acid--CoA ligase 1 isoform X2

    See identical proteins and their annotated locations for XP_006075177.1

    UniProtKB/TrEMBL
    A0A097P9M4
    Related
    ENSBALP00030001782.1, ENSBALT00030002689.1
    Conserved Domains (2) summary
    PLN02736
    Location:87 → 697
    PLN02736; long-chain acyl-CoA synthetase
    cd05927
    Location:117 → 694
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  3. XM_025280140.2 → XP_025135925.1  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A097P9M4
    Related
    ENSBALP00030001754.1, ENSBALT00030002647.1
    Conserved Domains (1) summary
    cd05927
    Location:117 → 694
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
Nucleotide Protein
Heading Accession and Version

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