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CHGA chromogranin A [ Bubalus bubalis (water buffalo) ]

Gene ID: 102413232, updated on 10-Mar-2024

Summary

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Gene symbol
CHGA
Gene description
chromogranin A
See related
EnsemblRapid:ENSBALG00030015416
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See CHGA in Genome Data Viewer
Location:
chromosome: 20
Exon count:
8
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 20 NC_059176.1 (12715324..12728678, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 20 NC_058362.1 (12341216..12354570, complement)

Chromosome 20 - NC_059176.1Genomic Context describing neighboring genes Neighboring gene GON7 subunit of KEOPS complex Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC123330853 Neighboring gene inositol-tetrakisphosphate 1-kinase Neighboring gene golgin A5 Neighboring gene serine/threonine-protein phosphatase PP1-gamma catalytic subunit B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in adenylate cyclase-activating adrenergic receptor signaling pathway involved in cardiac muscle relaxation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of catecholamine secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of insulin secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromaffin granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromogranin-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059176.1 Reference NDDB_SH_1 Primary Assembly

    Range
    12715324..12728678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006075431.3 → XP_006075493.3  chromogranin-A

    Related
    ENSBALP00030028390.1, ENSBALT00030042947.1
Nucleotide Protein
Heading Accession and Version

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