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ACSM5 acyl-CoA synthetase medium chain family member 5 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102413115, updated on 10-Mar-2024

Summary

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Gene symbol
ACSM5
Gene description
acyl-CoA synthetase medium chain family member 5
See related
EnsemblRapid:ENSBALG00030010991
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See ACSM5 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
14
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 24 NC_059180.1 (24144984..24175044, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 24 NC_058366.1 (23949937..23979986, complement)

Chromosome 24 - NC_059180.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene acyl-CoA synthetase medium chain family member 1 Neighboring gene acyl-coenzyme A synthetase ACSM2B, mitochondrial Neighboring gene protein disulfide isomerase like, testis expressed Neighboring gene uromodulin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fatty-acyl-CoA synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: acyl-coenzyme A synthetase ACSM5, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059180.1 Reference NDDB_SH_1 Primary Assembly

    Range
    24144984..24175044 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025274862.3 → XP_025130647.2  LOW QUALITY PROTEIN: acyl-coenzyme A synthetase ACSM5, mitochondrial

    Related
    ENSBALP00030021043.1, ENSBALT00030030814.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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