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PIGM phosphatidylinositol glycan anchor biosynthesis class M [ Bubalus bubalis (water buffalo) ]

Gene ID: 102413055, updated on 10-Mar-2024

Summary

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Gene symbol
PIGM
Gene description
phosphatidylinositol glycan anchor biosynthesis class M
See related
EnsemblRapid:ENSBALG00030034759
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See PIGM in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 6 NC_059162.1 (9762786..9764676)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 6 NC_058348.1 (9535112..9537002)

Chromosome 6 - NC_059162.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123333956 Neighboring gene potassium inwardly rectifying channel subfamily J member 10 Neighboring gene mth938 domain-containing protein-like Neighboring gene SLAM family member 9 Neighboring gene uncharacterized LOC102412171 Neighboring gene immunoglobulin superfamily member 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycolipid mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycosylphosphatidylinositol-mannosyltransferase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059162.1 Reference NDDB_SH_1 Primary Assembly

    Range
    9762786..9764676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006061029.3 → XP_006061091.3  GPI mannosyltransferase 1

    Related
    ENSBALP00030064248.1, ENSBALT00030096249.1
    Conserved Domains (1) summary
    pfam05007
    Location:140 → 408
    Mannosyl_trans; Mannosyltransferase (PIG-M)
Nucleotide Protein
Heading Accession and Version

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