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GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102412738, updated on 10-Mar-2024

Summary

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Gene symbol
GDPD1
Gene description
glycerophosphodiester phosphodiesterase domain containing 1
See related
EnsemblRapid:ENSBALG00030003399
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See GDPD1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 3 NC_059159.1 (52986051..53036807, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 3 NC_058345.1 (52409248..52460000, complement)

Chromosome 3 - NC_059159.1Genomic Context describing neighboring genes Neighboring gene yippee like 2 Neighboring gene uncharacterized LOC123332714 Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene SMG8 nonsense mediated mRNA decay factor Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene proline rich 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acylethanolamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysophospholipase D GDPD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059159.1 Reference NDDB_SH_1 Primary Assembly

    Range
    52986051..53036807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006045481.3 → XP_006045543.1  lysophospholipase D GDPD1

    Related
    ENSBALP00030006254.1, ENSBALT00030009643.1
    Conserved Domains (2) summary
    cd08612
    Location:14 → 311
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins
    pfam03009
    Location:45 → 302
    GDPD; Glycerophosphoryl diester phosphodiesterase family
Nucleotide Protein
Heading Accession and Version

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