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ATP5MC3 ATP synthase membrane subunit c locus 3 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102411347, updated on 18-Sep-2024

Summary

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Gene symbol
ATP5MC3
Gene description
ATP synthase membrane subunit c locus 3
See related
EnsemblRapid:ENSBALG00030024998
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Also known as
ATP5G3
Orthologs
human mouse all
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Genomic context

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See ATP5MC3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 2 NC_059158.1 (73828397..73831629)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 2 NC_058344.1 (73244468..73247699)

Chromosome 2 - NC_059158.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-like protein 5 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC123330926 Neighboring gene activating transcription factor 2 Neighboring gene uncharacterized LOC123330924 Neighboring gene small nucleolar RNA SNORA57 Neighboring gene chimerin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP synthase F(0) complex subunit C3, mitochondrial
Names
ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059158.1 Reference NDDB_SH_1 Primary Assembly

    Range
    73828397..73831629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006073590.4 → XP_006073652.1  ATP synthase F(0) complex subunit C3, mitochondrial

    See identical proteins and their annotated locations for XP_006073652.1

    Related
    ENSBALP00030047315.1, ENSBALT00030070039.1
    Conserved Domains (1) summary
    MTH00222
    Location:67 → 141
    ATP9; ATP synthase F0 subunit 9; Provisional
Nucleotide Protein
Heading Accession and Version

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