U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PSMD6 proteasome 26S subunit, non-ATPase 6 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102411122, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
PSMD6
Gene description
proteasome 26S subunit, non-ATPase 6
See related
EnsemblRapid:ENSBALG00030012423
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PSMD6 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
9
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 21 NC_059177.1 (37397613..37416304)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 21 NC_058363.1 (37050460..37069182)

Chromosome 21 - NC_059177.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112581192 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene ataxin 7 Neighboring gene THO complex subunit 7 Neighboring gene chromosome 21 C3orf49 homolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome regulatory particle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
26S proteasome non-ATPase regulatory subunit 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059177.1 Reference NDDB_SH_1 Primary Assembly

    Range
    37397613..37416304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006069730.4 → XP_006069792.1  26S proteasome non-ATPase regulatory subunit 6 isoform X1

    Related
    ENSBALP00030023456.1, ENSBALT00030034719.1
    Conserved Domains (3) summary
    COG5187
    Location:15 → 382
    RPN7; 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
    pfam01399
    Location:254 → 358
    PCI; PCI domain
    pfam10602
    Location:66 → 239
    RPN7; 26S proteasome subunit RPN7

  2. XM_025272770.2 → XP_025128555.1  26S proteasome non-ATPase regulatory subunit 6 isoform X2

    Conserved Domains (1) summary
    cl26505
    Location:1 → 333
    RPN7; 26S proteasome subunit RPN7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.