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SELL selectin L [ Bubalus bubalis (water buffalo) ]

Gene ID: 102410913, updated on 10-Mar-2024

Summary

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Gene symbol
SELL
Gene description
selectin L
See related
EnsemblRapid:ENSBALG00030003185
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See SELL in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 5 NC_059161.1 (43722067..43749589)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 5 NC_058347.1 (42398232..42425755)

Chromosome 5 - NC_059161.1Genomic Context describing neighboring genes Neighboring gene FIGNL1 interacting regulator of recombination and mitosis Neighboring gene methyltransferase 18, RPL3 N3(tau)-histidine Neighboring gene selectin E Neighboring gene selectin P Neighboring gene coagulation factor V

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sialic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte tethering or rolling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to cytokine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
L-selectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059161.1 Reference NDDB_SH_1 Primary Assembly

    Range
    43722067..43749589
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025285978.3 → XP_025141763.3  L-selectin isoform X1

    Conserved Domains (3) summary
    cd00033
    Location:197 → 255
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd00054
    Location:165 → 192
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl02432
    Location:39 → 157
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_025285979.3 → XP_025141764.3  L-selectin isoform X3

    Related
    ENSBALP00030005846.1, ENSBALT00030008996.1
    Conserved Domains (3) summary
    cd00033
    Location:197 → 255
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd00054
    Location:165 → 192
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl02432
    Location:39 → 157
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_006073097.4 → XP_006073159.3  L-selectin isoform X2

    Related
    ENSBALP00030005850.1, ENSBALT00030009002.1
    Conserved Domains (3) summary
    cd00033
    Location:197 → 255
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd00054
    Location:165 → 192
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl02432
    Location:39 → 157
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  4. XM_045165738.1 → XP_045021673.1  L-selectin isoform X4

    Conserved Domains (3) summary
    cd00033
    Location:197 → 255
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd00054
    Location:165 → 192
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl02432
    Location:39 → 157
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

RNA

  1. XR_006551172.2 RNA Sequence

  2. XR_003109473.3 RNA Sequence

  3. XR_006551171.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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