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CA4 carbonic anhydrase 4 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102410324, updated on 10-Mar-2024

Summary

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Gene symbol
CA4
Gene description
carbonic anhydrase 4
See related
EnsemblRapid:ENSBALG00030003179
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See CA4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 3 NC_059159.1 (50401343..50409151)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 3 NC_058345.1 (49826249..49834041)

Chromosome 3 - NC_059159.1Genomic Context describing neighboring genes Neighboring gene myosin XIX Neighboring gene small nucleolar RNA SNORA11 Neighboring gene zinc finger HIT-type containing 3 Neighboring gene ubiquitin specific peptidase 32 Neighboring gene U6 spliceosomal RNA Neighboring gene V-type proton ATPase subunit G 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbonate dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbonic anhydrase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059159.1 Reference NDDB_SH_1 Primary Assembly

    Range
    50401343..50409151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006065465.4 → XP_006065527.3  carbonic anhydrase 4 isoform X1

    Related
    ENSBALP00030005856.1, ENSBALT00030009010.1

  2. XM_025281155.3 → XP_025136940.2  carbonic anhydrase 4 isoform X2

    Related
    ENSBALP00030005843.1, ENSBALT00030008992.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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