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GALNT13 polypeptide N-acetylgalactosaminyltransferase 13 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102409735, updated on 10-Mar-2024

Summary

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Gene symbol
GALNT13
Gene description
polypeptide N-acetylgalactosaminyltransferase 13
See related
EnsemblRapid:ENSBALG00030001240
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See GALNT13 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
19
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 2 NC_059158.1 (93749598..94711902, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 2 NC_058344.1 (93081876..94035749, complement)

Chromosome 2 - NC_059158.1Genomic Context describing neighboring genes Neighboring gene lysocardiolipin acyltransferase 1-like Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene uncharacterized LOC112582169 Neighboring gene syndecan-3-like Neighboring gene uncharacterized LOC123331425 Neighboring gene uncharacterized LOC123331427 Neighboring gene reprimo, TP53 dependent G2 arrest mediator homolog Neighboring gene uncharacterized LOC123328509

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059158.1 Reference NDDB_SH_1 Primary Assembly

    Range
    93749598..94711902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044935208.2 → XP_044791143.2  polypeptide N-acetylgalactosaminyltransferase 13 isoform X2

    Related
    ENSBALP00030002532.1, ENSBALT00030003626.1
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 547
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_044935203.2 → XP_044791138.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 558
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_045164100.1 → XP_045020035.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

    Related
    ENSBALP00030002491.1, ENSBALT00030003571.1
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 558
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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