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B4GALNT4 beta-1,4-N-acetyl-galactosaminyltransferase 4 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102409676, updated on 10-Mar-2024

Summary

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Gene symbol
B4GALNT4
Gene description
beta-1,4-N-acetyl-galactosaminyltransferase 4
See related
EnsemblRapid:ENSBALG00030037272
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See B4GALNT4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
21
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 5 NC_059161.1 (132192404..132204438, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 5 NC_058347.1 (130468692..130480726, complement)

Chromosome 5 - NC_059161.1Genomic Context describing neighboring genes Neighboring gene single Ig and TIR domain containing Neighboring gene plakophilin 3 Neighboring gene interferon-induced transmembrane protein 3 Neighboring gene interferon-induced transmembrane protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059161.1 Reference NDDB_SH_1 Primary Assembly

    Range
    132192404..132204438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044943929.1 → XP_044799864.1  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 isoform X3

    Conserved Domains (1) summary
    cl08459
    Location:133 → 264
    PA14; PA14 domain

  2. XM_044943928.1 → XP_044799863.1  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 isoform X2

    Conserved Domains (2) summary
    TIGR03469
    Location:798 → 945
    HpnB; hopene-associated glycosyltransferase HpnB
    cl08459
    Location:133 → 264
    PA14; PA14 domain

  3. XM_025287135.2 → XP_025142920.2  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 isoform X1

    Related
    ENSBALP00030068825.1, ENSBALT00030103124.1
    Conserved Domains (3) summary
    TIGR03469
    Location:798 → 945
    HpnB; hopene-associated glycosyltransferase HpnB
    cl08459
    Location:133 → 264
    PA14; PA14 domain
    cl11394
    Location:962 → 1006
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_044943930.1 → XP_044799865.1  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 isoform X4

    Conserved Domains (3) summary
    TIGR03469
    Location:750 → 897
    HpnB; hopene-associated glycosyltransferase HpnB
    cl08459
    Location:85 → 216
    PA14; PA14 domain
    cl11394
    Location:914 → 958
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_025287138.2 → XP_025142923.2  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 isoform X5

    Conserved Domains (3) summary
    TIGR03469
    Location:616 → 763
    HpnB; hopene-associated glycosyltransferase HpnB
    cl08459
    Location:1 → 82
    PA14; PA14 domain
    cl11394
    Location:780 → 824
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RNA

  1. XR_006551482.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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