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ACADL acyl-CoA dehydrogenase long chain [ Bubalus bubalis (water buffalo) ]

Gene ID: 102409588, updated on 10-Mar-2024

Summary

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Gene symbol
ACADL
Gene description
acyl-CoA dehydrogenase long chain
See related
EnsemblRapid:ENSBALG00030038606
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See ACADL in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 2 NC_059158.1 (150227181..150270393, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 2 NC_058344.1 (149336046..149379267, complement)

Chromosome 2 - NC_059158.1Genomic Context describing neighboring genes Neighboring gene unc-80 homolog, NALCN channel complex subunit Neighboring gene uncharacterized LOC123332173 Neighboring gene KAT8 regulatory NSL complex subunit 1 like Neighboring gene ribulose-5-phosphate-3-epimerase Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene myosin light chain 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables long-chain fatty acyl-CoA dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables palmitoyl-CoA oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine metabolic process, CoA-linked IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid beta-oxidation using acyl-CoA dehydrogenase IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-chain fatty acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
long-chain specific acyl-CoA dehydrogenase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059158.1 Reference NDDB_SH_1 Primary Assembly

    Range
    150227181..150270393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025278180.3 → XP_025133965.3  long-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X3

    Conserved Domains (1) summary
    cl09933
    Location:56 → 381
    ACAD; Acyl-CoA dehydrogenase

  2. XM_006073192.4 → XP_006073254.3  long-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X2

    Conserved Domains (1) summary
    cl09933
    Location:56 → 392
    ACAD; Acyl-CoA dehydrogenase

  3. XM_006073191.4 → XP_006073253.4  long-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X1

    Related
    ENSBALP00030071337.1, ENSBALT00030106780.1
    Conserved Domains (1) summary
    cd01160
    Location:56 → 427
    LCAD; Long chain acyl-CoA dehydrogenase

  4. XM_025278181.2 → XP_025133966.1  long-chain specific acyl-CoA dehydrogenase, mitochondrial isoform X4

    Conserved Domains (1) summary
    cl09933
    Location:56 → 329
    ACAD; Acyl-CoA dehydrogenase
Nucleotide Protein
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