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GPCPD1 glycerophosphocholine phosphodiesterase 1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102408701, updated on 10-Mar-2024

Summary

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Gene symbol
GPCPD1
Gene description
glycerophosphocholine phosphodiesterase 1
See related
EnsemblRapid:ENSBALG00030017171
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See GPCPD1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
21
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 14 NC_059170.1 (36024530..36089313)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 14 NC_058356.1 (35285889..35350669)

Chromosome 14 - NC_059170.1Genomic Context describing neighboring genes Neighboring gene mitochondrial inner membrane protease subunit 1-like Neighboring gene uncharacterized LOC123329204 Neighboring gene uncharacterized LOC123329205 Neighboring gene AP-3 complex subunit sigma-1-like Neighboring gene prokineticin receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphocholine phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerophosphocholine phosphodiesterase GPCPD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059170.1 Reference NDDB_SH_1 Primary Assembly

    Range
    36024530..36089313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025264042.2 → XP_025119827.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X2

    Related
    ENSBALP00030032587.1, ENSBALT00030048425.1
    Conserved Domains (2) summary
    cd05814
    Location:4 → 127
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:319 → 589
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

  2. XM_006047744.3 → XP_006047806.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

    Related
    ENSBALP00030032611.1, ENSBALT00030048466.1
    Conserved Domains (3) summary
    cd05814
    Location:4 → 127
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:319 → 611
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
    pfam03009
    Location:323 → 611
    GDPD; Glycerophosphoryl diester phosphodiesterase family

  3. XM_025264043.2 → XP_025119828.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X4

    Conserved Domains (2) summary
    cd08607
    Location:239 → 531
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
    cl15347
    Location:3 → 47
    CBM20; The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is ...

  4. XM_025264044.2 → XP_025119829.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X4

    Conserved Domains (2) summary
    cd08607
    Location:239 → 531
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
    cl15347
    Location:3 → 47
    CBM20; The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is ...

  5. XM_044927916.1 → XP_044783851.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X3

RNA

  1. XR_003103129.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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