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SLC39A6 solute carrier family 39 member 6 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102408399, updated on 10-Mar-2024

Summary

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Gene symbol
SLC39A6
Gene description
solute carrier family 39 member 6
See related
EnsemblRapid:ENSBALG00030008689
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See SLC39A6 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
10
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 22 NC_059178.1 (41044663..41066557, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 22 NC_058364.1 (40899964..40921858, complement)

Chromosome 22 - NC_059178.1Genomic Context describing neighboring genes Neighboring gene chromosome 22 C18orf21 homolog Neighboring gene regulation of nuclear pre-mRNA domain containing 1A Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene elongator acetyltransferase complex subunit 2 Neighboring gene uncharacterized LOC102409482 Neighboring gene uncharacterized LOC112581378 Neighboring gene molybdenum cofactor sulfurase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular zinc ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in zinc ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc transporter ZIP6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059178.1 Reference NDDB_SH_1 Primary Assembly

    Range
    41044663..41066557 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006054977.3 → XP_006055039.1  zinc transporter ZIP6

    Related
    ENSBALP00030019331.1, ENSBALT00030028845.1
    Conserved Domains (1) summary
    pfam02535
    Location:309 → 728
    Zip; ZIP Zinc transporter
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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