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CACNA2D1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102406537, updated on 10-Mar-2024

Summary

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Gene symbol
CACNA2D1
Gene description
calcium voltage-gated channel auxiliary subunit alpha2delta 1
See related
EnsemblRapid:ENSBALG00030008248
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See CACNA2D1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
44
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 8 NC_059164.1 (37717756..38241837)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 8 NC_058350.1 (37509816..37923179)

Chromosome 8 - NC_059164.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123334885 Neighboring gene U2 spliceosomal RNA Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene transfer RNA serine (anticodon GGA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of L-type voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent calcium channel subunit alpha-2/delta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059164.1 Reference NDDB_SH_1 Primary Assembly

    Range
    37717756..38241837
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045166379.1 → XP_045022314.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X1

  2. XM_045166383.1 → XP_045022318.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X5

  3. XM_045166384.1 → XP_045022319.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X6

  4. XM_045166380.1 → XP_045022315.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X2

    Related
    ENSBALP00030015529.1, ENSBALT00030023141.1
    Conserved Domains (4) summary
    cd01463
    Location:239 → 417
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    pfam02743
    Location:425 → 530
    dCache_1; Cache domain
    pfam08399
    Location:104 → 223
    VWA_N; VWA N-terminal
    pfam08473
    Location:652 → 1079
    VGCC_alpha2; Neuronal voltage-dependent calcium channel alpha 2acd

  5. XM_045166385.1 → XP_045022320.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X7

    Related
    ENSBALP00030015546.1, ENSBALT00030023162.1
    Conserved Domains (4) summary
    cd01463
    Location:239 → 417
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    cl38916
    Location:509 → 606
    HK_sensor; Sensor domains of Histidine Kinase receptors
    pfam08399
    Location:104 → 223
    VWA_N; VWA N-terminal
    pfam08473
    Location:633 → 1060
    VGCC_alpha2; Neuronal voltage-dependent calcium channel alpha 2acd

  6. XM_045166387.1 → XP_045022322.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X9

    Conserved Domains (4) summary
    cd01463
    Location:239 → 417
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    cl38916
    Location:509 → 601
    HK_sensor; Sensor domains of Histidine Kinase receptors
    pfam08399
    Location:104 → 223
    VWA_N; VWA N-terminal
    pfam08473
    Location:628 → 1055
    VGCC_alpha2; Neuronal voltage-dependent calcium channel alpha 2acd

  7. XM_045166381.1 → XP_045022316.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X3

    Related
    ENSBALP00030015521.1, ENSBALT00030023129.1

  8. XM_045166386.1 → XP_045022321.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X8

    Related
    ENSBALP00030015492.1, ENSBALT00030023088.1

  9. XM_045166391.1 → XP_045022326.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X13

    Related
    ENSBALP00030015484.1, ENSBALT00030023081.1
    Conserved Domains (4) summary
    cd01463
    Location:239 → 417
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    pfam02743
    Location:425 → 530
    dCache_1; Cache domain
    pfam08399
    Location:104 → 223
    VWA_N; VWA N-terminal
    pfam08473
    Location:652 → 1072
    VGCC_alpha2; Neuronal voltage-dependent calcium channel alpha 2acd

  10. XM_045166382.1 → XP_045022317.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X4

    Related
    ENSBALP00030015568.1, ENSBALT00030023192.1
    Conserved Domains (4) summary
    cd01463
    Location:239 → 417
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    pfam02743
    Location:425 → 530
    dCache_1; Cache domain
    pfam08399
    Location:104 → 223
    VWA_N; VWA N-terminal
    pfam08473
    Location:645 → 1072
    VGCC_alpha2; Neuronal voltage-dependent calcium channel alpha 2acd

  11. XM_045166388.1 → XP_045022323.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X10

    Conserved Domains (4) summary
    cd01463
    Location:239 → 417
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    cl38916
    Location:509 → 606
    HK_sensor; Sensor domains of Histidine Kinase receptors
    pfam08399
    Location:104 → 223
    VWA_N; VWA N-terminal
    pfam08473
    Location:626 → 1053
    VGCC_alpha2; Neuronal voltage-dependent calcium channel alpha 2acd

  12. XM_045166389.1 → XP_045022324.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X11

    Related
    ENSBALP00030015616.1, ENSBALT00030023259.1
    Conserved Domains (4) summary
    cd01463
    Location:239 → 417
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    cl38916
    Location:509 → 601
    HK_sensor; Sensor domains of Histidine Kinase receptors
    pfam08399
    Location:104 → 223
    VWA_N; VWA N-terminal
    pfam08473
    Location:621 → 1048
    VGCC_alpha2; Neuronal voltage-dependent calcium channel alpha 2acd

  13. XM_045166392.1 → XP_045022327.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X14

  14. XM_045166390.1 → XP_045022325.1  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X12

Nucleotide Protein
Heading Accession and Version

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