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TMTC4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102406304, updated on 10-Mar-2024

Summary

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Gene symbol
TMTC4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
See related
EnsemblRapid:ENSBALG00030016815
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See TMTC4 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
19
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 13 NC_059169.1 (9876764..9934146)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 13 NC_058355.1 (9682885..9740206)

Chromosome 13 - NC_059169.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123328897 Neighboring gene uncharacterized LOC102410360 Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene propionyl-CoA carboxylase subunit alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC4
Names
transmembrane and tetratricopeptide repeat containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059169.1 Reference NDDB_SH_1 Primary Assembly

    Range
    9876764..9934146
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044927094.2 → XP_044783029.2  protein O-mannosyl-transferase TMTC4 isoform X3

    Related
    ENSBALP00030031832.1, ENSBALT00030047305.1

  2. XM_044927095.2 → XP_044783030.2  protein O-mannosyl-transferase TMTC4 isoform X4

  3. XM_025262606.3 → XP_025118391.3  protein O-mannosyl-transferase TMTC4 isoform X1

    Related
    ENSBALP00030031805.1, ENSBALT00030047266.1

  4. XM_044927093.2 → XP_044783028.2  protein O-mannosyl-transferase TMTC4 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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