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C17H22orf39 chromosome 17 C22orf39 homolog [ Bubalus bubalis (water buffalo) ]

Gene ID: 102406088, updated on 10-Mar-2024

Summary

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Gene symbol
C17H22orf39
Gene description
chromosome 17 C22orf39 homolog
See related
EnsemblRapid:ENSBALG00030041505
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See C17H22orf39 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
5
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 17 NC_059173.1 (208715..214777)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 17 NC_058359.1 (436948..443024)

Chromosome 17 - NC_059173.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 45 Neighboring gene ubiquitin recognition factor in ER associated degradation 1 Neighboring gene protein HIRA Neighboring gene mitochondrial ribosomal protein L40 Neighboring gene 60S ribosomal protein L10a-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
UPF0545 protein C22orf39 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059173.1 Reference NDDB_SH_1 Primary Assembly

    Range
    208715..214777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025267158.3 → XP_025122943.1  UPF0545 protein C22orf39 homolog isoform X2

    Conserved Domains (1) summary
    pfam11326
    Location:10 → 64
    DUF3128; Protein of unknown function (DUF3128)

  2. XM_044929860.2 → XP_044785795.1  UPF0545 protein C22orf39 homolog isoform X4

  3. XM_025267157.3 → XP_025122942.1  UPF0545 protein C22orf39 homolog isoform X1

    Conserved Domains (1) summary
    pfam11326
    Location:10 → 64
    DUF3128; Protein of unknown function (DUF3128)

  4. XM_006065542.4 → XP_006065604.1  UPF0545 protein C22orf39 homolog isoform X3

    Related
    ENSBALP00030076608.1, ENSBALT00030114804.1
    Conserved Domains (1) summary
    pfam11326
    Location:13 → 88
    DUF3128; Protein of unknown function (DUF3128)

RNA

  1. XR_006545447.2 RNA Sequence

  2. XR_006545446.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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