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PYGB glycogen phosphorylase B [ Bubalus bubalis (water buffalo) ]

Gene ID: 102406074, updated on 10-Mar-2024

Summary

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Gene symbol
PYGB
Gene description
glycogen phosphorylase B
See related
EnsemblRapid:ENSBALG00030037705
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See PYGB in Genome Data Viewer
Location:
chromosome: 14
Exon count:
20
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 14 NC_059170.1 (41124411..41160188, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 14 NC_058356.1 (40396373..40432196, complement)

Chromosome 14 - NC_059170.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123329216 Neighboring gene abhydrolase domain containing 12, lysophospholipase Neighboring gene transfer RNA glycine (anticodon ACC) Neighboring gene ectonucleoside triphosphate diphosphohydrolase 6 Neighboring gene uncharacterized LOC123329217

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen phosphorylase, brain form
Names
phosphorylase, glycogen; brain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059170.1 Reference NDDB_SH_1 Primary Assembly

    Range
    41124411..41160188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044927960.2 → XP_044783895.1  glycogen phosphorylase, brain form isoform X2

    Related
    ENSBALP00030069800.1, ENSBALT00030104431.1
    Conserved Domains (1) summary
    cd04300
    Location:29 → 793
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins

  2. XM_006041717.4 → XP_006041779.2  glycogen phosphorylase, brain form isoform X1

    Related
    ENSBALP00030069815.1, ENSBALT00030104448.1
    Conserved Domains (1) summary
    cd04300
    Location:29 → 827
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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