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DGCR2 DiGeorge syndrome critical region gene 2 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102405111, updated on 10-Mar-2024

Summary

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Gene symbol
DGCR2
Gene description
DiGeorge syndrome critical region gene 2
See related
EnsemblRapid:ENSBALG00030039350
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See DGCR2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 17 NC_059173.1 (323739..350911)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 17 NC_058359.1 (551933..578001)

Chromosome 17 - NC_059173.1Genomic Context describing neighboring genes Neighboring gene testis specific serine kinase 2 Neighboring gene testis specific serine kinase 1B Neighboring gene protein FAM246A-like Neighboring gene zinc finger protein 74

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integral membrane protein DGCR2/IDD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059173.1 Reference NDDB_SH_1 Primary Assembly

    Range
    323739..350911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044929864.2 → XP_044785799.1  integral membrane protein DGCR2/IDD isoform X2

    Related
    ENSBALP00030072771.1, ENSBALT00030108903.1
    Conserved Domains (3) summary
    smart00214
    Location:267 → 325
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cl02432
    Location:111 → 263
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_025267165.3 → XP_025122950.1  integral membrane protein DGCR2/IDD isoform X1

    Related
    ENSBALP00030072747.1, ENSBALT00030108873.1
    Conserved Domains (3) summary
    smart00214
    Location:268 → 326
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:30 → 66
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cl02432
    Location:112 → 264
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_025267168.3 → XP_025122953.1  integral membrane protein DGCR2/IDD isoform X3

    Related
    ENSBALP00030072739.1, ENSBALT00030108862.1
    Conserved Domains (2) summary
    smart00214
    Location:227 → 288
    VWC; von Willebrand factor (vWF) type C domain
    cl02432
    Location:71 → 223
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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