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CLEC12B C-type lectin domain family 12 member B [ Bubalus bubalis (water buffalo) ]

Gene ID: 102404851, updated on 10-Mar-2024

Summary

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Gene symbol
CLEC12B
Gene description
C-type lectin domain family 12 member B
See related
EnsemblRapid:ENSBALG00030028190
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See CLEC12B in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 4 NC_059160.1 (19940685..19947501, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 4 NC_058346.1 (19880771..19887587, complement)

Chromosome 4 - NC_059160.1Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 2 member H Neighboring gene uncharacterized LOC102404314 Neighboring gene C-type lectin domain family 12 member A Neighboring gene C-type lectin domain family 1 member B Neighboring gene C-type lectin domain containing 9A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein phosphatase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in natural killer cell inhibitory signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 12 member B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059160.1 Reference NDDB_SH_1 Primary Assembly

    Range
    19940685..19947501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044941087.2 → XP_044797022.1  C-type lectin domain family 12 member B isoform X1

    Conserved Domains (1) summary
    cd03593
    Location:183 → 305
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_044941088.2 → XP_044797023.1  C-type lectin domain family 12 member B isoform X3

    Conserved Domains (1) summary
    cd03593
    Location:77 → 199
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  3. XM_006059780.4 → XP_006059842.2  C-type lectin domain family 12 member B isoform X2

    Conserved Domains (1) summary
    cd03593
    Location:178 → 283
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  4. XM_006059779.4 → XP_006059841.2  C-type lectin domain family 12 member B isoform X1

    Related
    ENSBALP00030052454.1, ENSBALT00030078389.1
    Conserved Domains (1) summary
    cd03593
    Location:183 → 305
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
Nucleotide Protein
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