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SGCG sarcoglycan gamma [ Bubalus bubalis (water buffalo) ]

Gene ID: 102404253, updated on 10-Mar-2024

Summary

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Gene symbol
SGCG
Gene description
sarcoglycan gamma
See related
EnsemblRapid:ENSBALG00030015731
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See SGCG in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 13 NC_059169.1 (55004552..55047170)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 13 NC_058355.1 (55948032..55990645)

Chromosome 13 - NC_059169.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112578449 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene uncharacterized LOC123328987 Neighboring gene sacsin molecular chaperone Neighboring gene TNF receptor superfamily member 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059169.1 Reference NDDB_SH_1 Primary Assembly

    Range
    55004552..55047170
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044927291.2 → XP_044783226.2  gamma-sarcoglycan isoform X1

    Related
    ENSBALP00030028957.1, ENSBALT00030043865.1

  2. XM_006070938.4 → XP_006071000.3  gamma-sarcoglycan isoform X2

    Related
    ENSBALP00030028943.1, ENSBALT00030043849.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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