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LMAN2L lectin, mannose binding 2 like [ Bubalus bubalis (water buffalo) ]

Gene ID: 102404113, updated on 19-Jun-2024

Summary

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Gene symbol
LMAN2L
Gene description
lectin, mannose binding 2 like
See related
EnsemblRapid:ENSBALG00030020557
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See LMAN2L in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 12 NC_059168.1 (2598995..2618373, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 12 NC_058354.1 (2576403..2595807, complement)

Chromosome 12 - NC_059168.1Genomic Context describing neighboring genes Neighboring gene AT-rich interaction domain 5A Neighboring gene KAT8 regulatory NSL complex subunit 3 Neighboring gene fer-1 like family member 5 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 4 Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059168.1 Reference NDDB_SH_1 Primary Assembly

    Range
    2598995..2618373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006059871.4 → XP_006059933.2  VIP36-like protein isoform X3

    Conserved Domains (1) summary
    cl14058
    Location:50 → 309
    lectin_L-type; legume lectins

  2. XM_006059869.4 → XP_006059931.2  VIP36-like protein isoform X1

    Conserved Domains (1) summary
    cl14058
    Location:50 → 309
    lectin_L-type; legume lectins

  3. XM_006059870.4 → XP_006059932.2  VIP36-like protein isoform X2

    Related
    ENSBALP00030038675.1, ENSBALT00030057524.1
    Conserved Domains (1) summary
    cl14058
    Location:50 → 298
    lectin_L-type; legume lectins

  4. XM_044925592.2 → XP_044781527.1  VIP36-like protein isoform X6

    Conserved Domains (1) summary
    cl14058
    Location:11 → 143
    lectin_L-type; legume lectins

  5. XM_025260638.3 → XP_025116423.1  VIP36-like protein isoform X5

    Related
    ENSBALP00030038641.1, ENSBALT00030057465.1
    Conserved Domains (1) summary
    cl14058
    Location:1 → 171
    lectin_L-type; legume lectins

  6. XM_044925591.2 → XP_044781526.1  VIP36-like protein isoform X4

    Related
    ENSBALP00030038624.1, ENSBALT00030057433.1
    Conserved Domains (1) summary
    cl14058
    Location:26 → 232
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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