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HACD4 3-hydroxyacyl-CoA dehydratase 4 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102403025, updated on 10-Mar-2024

Summary

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Gene symbol
HACD4
Gene description
3-hydroxyacyl-CoA dehydratase 4
See related
EnsemblRapid:ENSBALG00030033173
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See HACD4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 3 NC_059159.1 (86068993..86095263)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 3 NC_058345.1 (85080130..85106397)

Chromosome 3 - NC_059159.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123465591 Neighboring gene interferon beta-2 Neighboring gene interferon beta-2 Neighboring gene uncharacterized LOC123332787 Neighboring gene cullin-7-like Neighboring gene focadhesin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059159.1 Reference NDDB_SH_1 Primary Assembly

    Range
    86068993..86095263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006059091.3 → XP_006059153.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 isoform X1

    Conserved Domains (1) summary
    pfam04387
    Location:65 → 222
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

  2. XM_044939793.2 → XP_044795728.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 isoform X2

    Related
    ENSBALP00030061217.1, ENSBALT00030091849.1
    Conserved Domains (1) summary
    pfam04387
    Location:28 → 186
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

  3. XM_025281459.3 → XP_025137244.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 isoform X3

    Conserved Domains (1) summary
    cl02156
    Location:65 → 165
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA
Nucleotide Protein
Heading Accession and Version

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