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CPN2 carboxypeptidase N subunit 2 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102402927, updated on 10-Mar-2024

Summary

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Gene symbol
CPN2
Gene description
carboxypeptidase N subunit 2
See related
EnsemblRapid:ENSBALG00030004062
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See CPN2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 1 NC_059157.1 (118567946..118577452)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 1 NC_058343.1 (117381567..117391072)

Chromosome 1 - NC_059157.1Genomic Context describing neighboring genes Neighboring gene glycoprotein V platelet Neighboring gene leucine rich repeat containing 15 Neighboring gene uncharacterized LOC102403259 Neighboring gene uncharacterized LOC123334085

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxypeptidase N subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059157.1 Reference NDDB_SH_1 Primary Assembly

    Range
    118567946..118577452
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006041527.4 → XP_006041589.3  carboxypeptidase N subunit 2

    Related
    ENSBALP00030007399.1, ENSBALT00030011355.1
    Conserved Domains (4) summary
    TIGR00864
    Location:371 → 433
    PCC; polycystin cation channel protein
    smart00013
    Location:21 → 52
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:115 → 397
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:123 → 146
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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