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CACNA2D3 calcium voltage-gated channel auxiliary subunit alpha2delta 3 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102402860, updated on 10-Mar-2024

Summary

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Gene symbol
CACNA2D3
Gene description
calcium voltage-gated channel auxiliary subunit alpha2delta 3
See related
EnsemblRapid:ENSBALG00030036744
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See CACNA2D3 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
38
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 21 NC_059177.1 (45824246..46733352, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 21 NC_058363.1 (45515823..46426087, complement)

Chromosome 21 - NC_059177.1Genomic Context describing neighboring genes Neighboring gene Wnt family member 5A Neighboring gene uncharacterized LOC112581161 Neighboring gene transfer RNA serine (anticodon GGA) Neighboring gene leucine rich repeats and transmembrane domains 1 Neighboring gene U2 spliceosomal RNA Neighboring gene selenoprotein K Neighboring gene interleukin 17 receptor B Neighboring gene actin related protein 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent calcium channel subunit alpha-2/delta-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059177.1 Reference NDDB_SH_1 Primary Assembly

    Range
    45824246..46733352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025272778.3 → XP_025128563.3  voltage-dependent calcium channel subunit alpha-2/delta-3 isoform X2

    Related
    ENSBALP00030067891.1, ENSBALT00030101812.1
    Conserved Domains (5) summary
    cd01463
    Location:242 → 425
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    cd12912
    Location:502 → 616
    PDC2_MCP_like; second PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins and similar domains
    cl38916
    Location:446 → 500
    HK_sensor; Sensor domains of Histidine Kinase receptors
    pfam08399
    Location:113 → 229
    VWA_N; VWA N-terminal
    pfam08473
    Location:649 → 1062
    VGCC_alpha2; Neuronal voltage-dependent calcium channel alpha 2acd

  2. XM_025272777.3 → XP_025128562.3  voltage-dependent calcium channel subunit alpha-2/delta-3 isoform X1

    Related
    ENSBALP00030067917.1, ENSBALT00030101842.1
    Conserved Domains (5) summary
    cd01463
    Location:242 → 425
    vWA_VGCC_like; VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at ...
    cd12912
    Location:508 → 622
    PDC2_MCP_like; second PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins and similar domains
    cl38916
    Location:446 → 506
    HK_sensor; Sensor domains of Histidine Kinase receptors
    pfam08399
    Location:113 → 229
    VWA_N; VWA N-terminal
    pfam08473
    Location:655 → 1068
    VGCC_alpha2; Neuronal voltage-dependent calcium channel alpha 2acd

  3. XM_044933476.2 → XP_044789411.2  voltage-dependent calcium channel subunit alpha-2/delta-3 isoform X3

Nucleotide Protein
Heading Accession and Version

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