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CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102402654, updated on 10-Mar-2024

Summary

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Gene symbol
CSGALNACT2
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 2
See related
EnsemblRapid:ENSBALG00030003222
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See CSGALNACT2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 4 NC_059160.1 (132931534..132972448)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 4 NC_058346.1 (131709297..131750195)

Chromosome 4 - NC_059160.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene protein lin-28 homolog A-like Neighboring gene ret proto-oncogene Neighboring gene RasGEF domain family member 1A Neighboring gene FXYD domain containing ion transport regulator 4 Neighboring gene heterogeneous nuclear ribonucleoprotein F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059160.1 Reference NDDB_SH_1 Primary Assembly

    Range
    132931534..132972448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025284569.3 → XP_025140354.3  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X1

    Related
    ENSBALP00030005905.1, ENSBALT00030009088.1
    Conserved Domains (1) summary
    cl11394
    Location:108 → 581
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_025284570.3 → XP_025140355.3  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X2

    Related
    ENSBALP00030005934.1, ENSBALT00030009128.1
    Conserved Domains (1) summary
    cl11394
    Location:108 → 549
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_044942088.2 → XP_044798023.2  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X5

    Related
    ENSBALP00030005918.1, ENSBALT00030009105.1

  4. XM_025284572.3 → XP_025140357.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X3

    Conserved Domains (1) summary
    cl11394
    Location:173 → 358
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_044942087.2 → XP_044798022.2  chondroitin sulfate N-acetylgalactosaminyltransferase 2 isoform X4

RNA

  1. XR_006550747.2 RNA Sequence

  2. XR_006550748.2 RNA Sequence

  3. XR_006550746.2 RNA Sequence

  4. XR_003109030.3 RNA Sequence

  5. XR_006550745.2 RNA Sequence

  6. XR_003109031.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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