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AGRN agrin [ Bubalus bubalis (water buffalo) ]

Gene ID: 102402519, updated on 10-Mar-2024

Summary

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Gene symbol
AGRN
Gene description
agrin
See related
EnsemblRapid:ENSBALG00030002408
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See AGRN in Genome Data Viewer
Location:
chromosome: 5
Exon count:
40
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 5 NC_059161.1 (29611057..29650464)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 5 NC_058347.1 (29072994..29074405)

Chromosome 5 - NC_059161.1Genomic Context describing neighboring genes Neighboring gene hes family bHLH transcription factor 4 Neighboring gene ISG15 ubiquitin like modifier Neighboring gene uncharacterized LOC123465791 Neighboring gene uncharacterized LOC123465790 Neighboring gene tyrosine-protein phosphatase non-receptor type 11 Neighboring gene ring finger protein 223

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled acetylcholine receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor clustering IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059161.1 Reference NDDB_SH_1 Primary Assembly

    Range
    29611057..29650464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045165700.1 → XP_045021635.1  agrin isoform X7

    Related
    ENSBALP00030004275.1, ENSBALT00030006657.1

  2. XM_045165695.1 → XP_045021630.1  agrin isoform X2

  3. XM_045165697.1 → XP_045021632.1  agrin isoform X4

  4. XM_045165694.1 → XP_045021629.1  agrin isoform X1

    Related
    ENSBALP00030004282.1, ENSBALT00030006673.1

  5. XM_045165696.1 → XP_045021631.1  agrin isoform X3

    Related
    ENSBALP00030004288.1, ENSBALT00030006684.1

  6. XM_045165699.1 → XP_045021634.1  agrin isoform X6

  7. XM_045165698.1 → XP_045021633.1  agrin isoform X5

    Related
    ENSBALP00030004259.1, ENSBALT00030006617.1
Nucleotide Protein
Heading Accession and Version

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