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B3GNT5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102402441, updated on 2-May-2024

Summary

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Gene symbol
B3GNT5
Gene description
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
See related
EnsemblRapid:ENSBALG00030039292
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See B3GNT5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 1 NC_059157.1 (129180085..129257724, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 1 NC_058343.1 (127986638..128077561, complement)

Chromosome 1 - NC_059157.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102403745 Neighboring gene small nucleolar RNA SNORA63 Neighboring gene small nucleolar RNA SNORA81 Neighboring gene MCF.2 cell line derived transforming sequence-like 2 Neighboring gene uncharacterized LOC123333973 Neighboring gene lysosomal associated membrane protein 3 Neighboring gene methylcrotonyl-CoA carboxylase subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059157.1 Reference NDDB_SH_1 Primary Assembly

    Range
    129180085..129257724 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006075317.4 → XP_006075379.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase

    See identical proteins and their annotated locations for XP_006075379.1

    Related
    ENSBALP00030072661.1, ENSBALT00030108752.1
    Conserved Domains (1) summary
    cl21608
    Location:104 → 301
    Galactosyl_T; Galactosyltransferase

  2. XM_006075318.4 → XP_006075380.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase

    See identical proteins and their annotated locations for XP_006075380.1

    Related
    ENSBALP00030072645.1, ENSBALT00030108729.1
    Conserved Domains (1) summary
    cl21608
    Location:104 → 301
    Galactosyl_T; Galactosyltransferase

  3. XM_006075319.4 → XP_006075381.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase

    See identical proteins and their annotated locations for XP_006075381.1

    Related
    ENSBALP00030072624.1, ENSBALT00030108694.1
    Conserved Domains (1) summary
    cl21608
    Location:104 → 301
    Galactosyl_T; Galactosyltransferase

  4. XM_006075320.4 → XP_006075382.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase

    See identical proteins and their annotated locations for XP_006075382.1

    Conserved Domains (1) summary
    cl21608
    Location:104 → 301
    Galactosyl_T; Galactosyltransferase

  5. XM_044944291.2 → XP_044800226.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase

    Related
    ENSBALP00030072642.1, ENSBALT00030108722.1
    Conserved Domains (1) summary
    cl21608
    Location:104 → 301
    Galactosyl_T; Galactosyltransferase

  6. XM_044944283.2 → XP_044800218.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase

    Conserved Domains (1) summary
    cl21608
    Location:104 → 301
    Galactosyl_T; Galactosyltransferase

RNA

  1. XR_006551622.2 RNA Sequence

  2. XR_006551623.2 RNA Sequence

  3. XR_006551625.2 RNA Sequence

  4. XR_006551621.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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