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SPACA3 sperm acrosome associated 3 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102402162, updated on 10-Mar-2024

Summary

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Gene symbol
SPACA3
Gene description
sperm acrosome associated 3
See related
EnsemblRapid:ENSBALG00030038772
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See SPACA3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 3 NC_059159.1 (45929880..45937796)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 3 NC_058345.1 (45373825..45383423)

Chromosome 3 - NC_059159.1Genomic Context describing neighboring genes Neighboring gene histone H2B Neighboring gene transmembrane protein 98 Neighboring gene acid sensing ion channel subunit 2 Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA lysine (anticodon UUU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysozyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fusion of sperm to egg plasma membrane involved in single fertilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in acrosomal vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sperm flagellum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sperm acrosome membrane-associated protein 3
Names
sperm lysozyme-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059159.1 Reference NDDB_SH_1 Primary Assembly

    Range
    45929880..45937796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006059433.4 → XP_006059495.1  sperm acrosome membrane-associated protein 3

    See identical proteins and their annotated locations for XP_006059495.1

    UniProtKB/TrEMBL
    I3RU65
    Related
    ENSBALP00030071776.1, ENSBALT00030107289.1
    Conserved Domains (1) summary
    cd00119
    Location:36 → 159
    LYZ1; C-type lysozyme (1, 4-beta-N-acetylmuramidase, LYZ) and alpha-lactalbumin (lactose synthase B protein, LA). They have a close evolutionary relationship and similar tertiary structure, however, functionally they are quite different. Lysozymes have ...
Nucleotide Protein
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