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ORMDL1 ORMDL sphingolipid biosynthesis regulator 1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102401071, updated on 19-Jun-2024

Summary

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Gene symbol
ORMDL1
Gene description
ORMDL sphingolipid biosynthesis regulator 1
See related
EnsemblRapid:ENSBALG00030025694
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See ORMDL1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 2 NC_059158.1 (58736813..58748956)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 2 NC_058344.1 (58347257..58359398)

Chromosome 2 - NC_059158.1Genomic Context describing neighboring genes Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene uncharacterized LOC123330600 Neighboring gene PMS1 homolog 1, mismatch repair system component Neighboring gene O-sialoglycoprotein endopeptidase like 1 Neighboring gene ankyrin and armadillo repeat containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular sphingolipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ORM1-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059158.1 Reference NDDB_SH_1 Primary Assembly

    Range
    58736813..58748956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006076952.3 → XP_006077014.1  ORM1-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006077014.1

    Related
    ENSBALP00030048417.1, ENSBALT00030071866.1
    Conserved Domains (1) summary
    pfam04061
    Location:11 → 146
    ORMDL; ORMDL family

  2. XM_006076951.3 → XP_006077013.1  ORM1-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006077013.1

    Conserved Domains (1) summary
    pfam04061
    Location:11 → 146
    ORMDL; ORMDL family

  3. XM_044932557.2 → XP_044788492.1  ORM1-like protein 1 isoform X2

    Conserved Domains (1) summary
    cl02117
    Location:8 → 109
    ORMDL; ORMDL family
Nucleotide Protein
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