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P3H2 prolyl 3-hydroxylase 2 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102400880, updated on 10-Mar-2024

Summary

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Gene symbol
P3H2
Gene description
prolyl 3-hydroxylase 2
See related
EnsemblRapid:ENSBALG00030005065
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See P3H2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 1 NC_059157.1 (122550123..122725410)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 1 NC_058343.1 (121380447..121555940)

Chromosome 1 - NC_059157.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123333810 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene claudin 1 Neighboring gene TP53-regulated inhibitor of apoptosis 1-like Neighboring gene tumor protein p63

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059157.1 Reference NDDB_SH_1 Primary Assembly

    Range
    122550123..122725410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025286561.3 → XP_025142346.3  prolyl 3-hydroxylase 2 isoform X1

    Related
    ENSBALP00030009599.1, ENSBALT00030014278.1

  2. XM_044943619.2 → XP_044799554.2  prolyl 3-hydroxylase 2 isoform X2

    Related
    ENSBALP00030009567.1, ENSBALT00030014237.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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