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ACAN aggrecan [ Bubalus bubalis (water buffalo) ]

Gene ID: 102399993, updated on 10-Mar-2024

Summary

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Gene symbol
ACAN
Gene description
aggrecan
See related
EnsemblRapid:ENSBALG00030020471
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See ACAN in Genome Data Viewer
Location:
chromosome: 20
Exon count:
19
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 20 NC_059176.1 (49621011..49689154, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 20 NC_058362.1 (49179652..49247731, complement)

Chromosome 20 - NC_059176.1Genomic Context describing neighboring genes Neighboring gene milk fat globule EGF and factor V/VIII domain containing Neighboring gene hyaluronan and proteoglycan link protein 3 Neighboring gene U6 spliceosomal RNA Neighboring gene myeloid-associated differentiation marker-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aggrecan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059176.1 Reference NDDB_SH_1 Primary Assembly

    Range
    49621011..49689154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044932747.2 → XP_044788682.2  aggrecan core protein isoform X3

    Related
    ENSBALP00030038606.1, ENSBALT00030057397.1

  2. XM_044932745.2 → XP_044788680.2  aggrecan core protein isoform X1

    Related
    ENSBALP00030038480.1, ENSBALT00030057181.1

  3. XM_044932746.2 → XP_044788681.2  aggrecan core protein isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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