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COLEC12 collectin subfamily member 12 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102399872, updated on 10-Mar-2024

Summary

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Gene symbol
COLEC12
Gene description
collectin subfamily member 12
See related
EnsemblRapid:ENSBALG00030017339
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See COLEC12 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
16
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 22 NC_059178.1 (26654899..26837918)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 22 NC_058364.1 (26580599..26763703)

Chromosome 22 - NC_059178.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene centrin 1 Neighboring gene uncharacterized LOC123331162 Neighboring gene uncharacterized LOC123331163 Neighboring gene uncharacterized LOC102400432 Neighboring gene THO complex 1 Neighboring gene ubiquitin specific peptidase 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables low-density lipoprotein particle binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pattern recognition receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collectin-12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059178.1 Reference NDDB_SH_1 Primary Assembly

    Range
    26654899..26837918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006079204.4 → XP_006079266.1  collectin-12 isoform X1

    Related
    ENSBALP00030032762.1, ENSBALT00030048703.1
    Conserved Domains (5) summary
    cd03590
    Location:607 → 732
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    pfam01391
    Location:454 → 569
    Collagen; Collagen triple helix repeat (20 copies)
    pfam05714
    Location:66 → 188
    Borrelia_lipo_1; Borrelia burgdorferi virulent strain associated lipoprotein
    cl01416
    Location:286 → 359
    Fimbrial; Fimbrial protein
    cl02193
    Location:157 → 317
    VirB5_like; VirB5 protein family

  2. XM_044934565.2 → XP_044790500.1  collectin-12 isoform X2

    Conserved Domains (2) summary
    cd03590
    Location:607 → 690
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    COG1511
    Location:51 → 430
    YhgE; Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown]

  3. XM_044934566.2 → XP_044790501.1  collectin-12 isoform X3

    Conserved Domains (2) summary
    cd03590
    Location:607 → 686
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    COG1511
    Location:51 → 430
    YhgE; Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown]

  4. XM_044934570.2 → XP_044790505.1  collectin-12 isoform X4

    Conserved Domains (2) summary
    cd03590
    Location:543 → 622
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    COG1196
    Location:13 → 286
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  5. XM_044934568.2 → XP_044790503.1  collectin-12 isoform X4

    Conserved Domains (2) summary
    cd03590
    Location:543 → 622
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    COG1196
    Location:13 → 286
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  6. XM_044934567.2 → XP_044790502.1  collectin-12 isoform X4

    Related
    ENSBALP00030032696.1, ENSBALT00030048606.1
    Conserved Domains (2) summary
    cd03590
    Location:543 → 622
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    COG1196
    Location:13 → 286
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  7. XM_044934571.2 → XP_044790506.1  collectin-12 isoform X4

    Conserved Domains (2) summary
    cd03590
    Location:543 → 622
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    COG1196
    Location:13 → 286
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
Heading Accession and Version

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