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DHDH dihydrodiol dehydrogenase [ Bubalus bubalis (water buffalo) ]

Gene ID: 102399742, updated on 10-Mar-2024

Summary

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Gene symbol
DHDH
Gene description
dihydrodiol dehydrogenase
See related
EnsemblRapid:ENSBALG00030030205
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See DHDH in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 18 NC_059174.1 (54982301..54992934)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 18 NC_058360.1 (55357006..55367630)

Chromosome 18 - NC_059174.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 15A Neighboring gene TUB like protein 2 Neighboring gene nucleobindin 1 Neighboring gene BCL2 associated X, apoptosis regulator Neighboring gene ferritin light chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-xylose 1-dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trans-1,2-dihydrobenzene-1,2-diol dehydrogenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059174.1 Reference NDDB_SH_1 Primary Assembly

    Range
    54982301..54992934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006050926.4 → XP_006050988.1  trans-1,2-dihydrobenzene-1,2-diol dehydrogenase

    Related
    ENSBALP00030055606.1, ENSBALT00030083450.1
    Conserved Domains (2) summary
    COG0673
    Location:1 → 327
    MviM; Predicted dehydrogenase [General function prediction only]
    pfam01408
    Location:3 → 121
    GFO_IDH_MocA; Oxidoreductase family, NAD-binding Rossmann fold
Nucleotide Protein
Heading Accession and Version

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