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DDOST dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit [ Bubalus bubalis (water buffalo) ]

Gene ID: 102398723, updated on 10-Mar-2024

Summary

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Gene symbol
DDOST
Gene description
dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit
See related
EnsemblRapid:ENSBALG00030008227
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See DDOST in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 2 NC_059158.1 (183994520..184008034)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 2 NC_058344.1 (182817587..182831104)

Chromosome 2 - NC_059158.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 17 Neighboring gene uncharacterized LOC123332244 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene PTEN induced kinase 1 Neighboring gene uncharacterized LOC123332245 Neighboring gene cytidine deaminase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein N-linked glycosylation via asparagine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oligosaccharyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059158.1 Reference NDDB_SH_1 Primary Assembly

    Range
    183994520..184008034
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006042261.4 → XP_006042323.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit

    Related
    ENSBALP00030015379.1, ENSBALT00030022945.1
    Conserved Domains (1) summary
    pfam03345
    Location:31 → 438
    DDOST_48kD; Oligosaccharyltransferase 48 kDa subunit beta
Nucleotide Protein
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