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SH2D5 SH2 domain containing 5 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102398399, updated on 10-Mar-2024

Summary

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Gene symbol
SH2D5
Gene description
SH2 domain containing 5
See related
EnsemblRapid:ENSBALG00030007682
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See SH2D5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 2 NC_059158.1 (183925726..183940137)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 2 NC_058344.1 (182772858..182787262)

Chromosome 2 - NC_059158.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4 gamma 3 Neighboring gene heterochromatin protein 1 binding protein 3 Neighboring gene uncharacterized LOC123332244 Neighboring gene kinesin family member 17 Neighboring gene transfer RNA glycine (anticodon GCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Transcriptome Assembly of the Chinese Swamp Buffalo by RNA Sequencing and SSR Marker Discovery. Deng T, et al. PLoS One, 2016. PMID 26766209, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SH2 domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059158.1 Reference NDDB_SH_1 Primary Assembly

    Range
    183925726..183940137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044938172.2 → XP_044794107.2  SH2 domain-containing protein 5 isoform X4

  2. XM_025278810.3 → XP_025134595.1  SH2 domain-containing protein 5 isoform X1

    Related
    ENSBALP00030014128.1, ENSBALT00030021379.1
    Conserved Domains (2) summary
    cd00173
    Location:302 → 378
    SH2; Src homology 2 (SH2) domain
    cd13157
    Location:23 → 151
    PTB_tensin-related; Tensin-related Phosphotyrosine-binding (PTB) domain

  3. XM_044938171.2 → XP_044794106.1  SH2 domain-containing protein 5 isoform X3

  4. XM_044938175.2 → XP_044794110.1  SH2 domain-containing protein 5 isoform X7

    Conserved Domains (2) summary
    cd00173
    Location:253 → 329
    SH2; Src homology 2 (SH2) domain
    cl17171
    Location:23 → 102
    PH-like; Pleckstrin homology-like domain

  5. XM_044938173.2 → XP_044794108.1  SH2 domain-containing protein 5 isoform X5

  6. XM_044938176.2 → XP_044794111.1  SH2 domain-containing protein 5 isoform X8

    Conserved Domains (2) summary
    cd00173
    Location:228 → 304
    SH2; Src homology 2 (SH2) domain
    cl17171
    Location:23 → 77
    PH-like; Pleckstrin homology-like domain

  7. XM_025278809.3 → XP_025134594.1  SH2 domain-containing protein 5 isoform X2

    Related
    ENSBALP00030014108.1, ENSBALT00030021335.1
    Conserved Domains (2) summary
    cd00173
    Location:301 → 377
    SH2; Src homology 2 (SH2) domain
    cd13157
    Location:23 → 150
    PTB_tensin-related; Tensin-related Phosphotyrosine-binding (PTB) domain

  8. XM_044938174.2 → XP_044794109.1  SH2 domain-containing protein 5 isoform X6

    Related
    ENSBALP00030014118.1, ENSBALT00030021351.1

  9. XM_044938177.2 → XP_044794112.1  SH2 domain-containing protein 5 isoform X9

    Conserved Domains (2) summary
    cd00173
    Location:227 → 303
    SH2; Src homology 2 (SH2) domain
    cl17171
    Location:23 → 76
    PH-like; Pleckstrin homology-like domain

  10. XM_044938178.2 → XP_044794113.1  SH2 domain-containing protein 5 isoform X10

    Related
    ENSBALP00030014096.1, ENSBALT00030021318.1
    Conserved Domains (2) summary
    cd00173
    Location:224 → 300
    SH2; Src homology 2 (SH2) domain
    cl17171
    Location:3 → 73
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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