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PLCD1 phospholipase C delta 1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102397395, updated on 10-Mar-2024

Summary

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Gene symbol
PLCD1
Gene description
phospholipase C delta 1
See related
EnsemblRapid:ENSBALG00030011975
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See PLCD1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
16
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 21 NC_059177.1 (11447274..11469107, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 21 NC_058363.1 (11392530..11414358, complement)

Chromosome 21 - NC_059177.1Genomic Context describing neighboring genes Neighboring gene CTD small phosphatase like Neighboring gene DPH3 homolog Neighboring gene uncharacterized LOC102397064 Neighboring gene villin like Neighboring gene DLEC1 cilia and flagella associated protein Neighboring gene hepatoma-derived growth factor-like Neighboring gene transfer RNA serine (anticodon GGA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059177.1 Reference NDDB_SH_1 Primary Assembly

    Range
    11447274..11469107 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025271971.3 → XP_025127756.2  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 isoform X2

    Related
    ENSBALP00030022687.1, ENSBALT00030033479.1
    Conserved Domains (4) summary
    cd00275
    Location:629 → 755
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08593
    Location:295 → 596
    PI-PLCc_delta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta
    cd13363
    Location:22 → 139
    PH_PLC_delta; Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain
    cd16217
    Location:144 → 283
    EFh_PI-PLCdelta1; EF-hand motif found in phosphoinositide phospholipase C delta 1 (PI-PLC-delta1)

  2. XM_006077022.4 → XP_006077084.3  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 isoform X1

    Related
    ENSBALP00030022657.1, ENSBALT00030033427.1
    Conserved Domains (4) summary
    cd00275
    Location:654 → 780
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08593
    Location:320 → 621
    PI-PLCc_delta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta
    cd13363
    Location:47 → 164
    PH_PLC_delta; Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain
    cd16217
    Location:169 → 308
    EFh_PI-PLCdelta1; EF-hand motif found in phosphoinositide phospholipase C delta 1 (PI-PLC-delta1)
Nucleotide Protein
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