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COG8 component of oligomeric golgi complex 8 [ Bubalus bubalis (water buffalo) ]

Gene ID: 102396833, updated on 10-Mar-2024

Summary

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Gene symbol
COG8
Gene description
component of oligomeric golgi complex 8
See related
EnsemblRapid:ENSBALG00030039552 EnsemblRapid:ENSBALG00030039579
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See COG8 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 18 NC_059174.1 (36054894..36063814, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 18 NC_058360.1 (36047767..36056702, complement)

Chromosome 18 - NC_059174.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123330432 Neighboring gene syntrophin beta 2 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene vacuolar protein sorting 4 homolog A Neighboring gene nucleolar pre-rRNA processing protein NIP7 Neighboring gene transmembrane p24 trafficking protein 6 Neighboring gene telomeric repeat binding factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide deformylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-terminal protein amino acid modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in co-translational protein modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-methionine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
conserved oligomeric Golgi complex subunit 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059174.1 Reference NDDB_SH_1 Primary Assembly

    Range
    36054894..36063814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044932111.2 → XP_044788046.1  conserved oligomeric Golgi complex subunit 8 isoform X3

  2. XM_025268948.3 → XP_025124733.1  conserved oligomeric Golgi complex subunit 8 isoform X2

    Related
    ENSBALP00030073094.1, ENSBALT00030109383.1
    Conserved Domains (1) summary
    cd00487
    Location:74 → 231
    Pep_deformylase; Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II) ...

  3. XM_006047625.4 → XP_006047687.1  conserved oligomeric Golgi complex subunit 8 isoform X1

    Related
    ENSBALP00030073144.1, ENSBALT00030109473.1
    Conserved Domains (1) summary
    pfam04124
    Location:56 → 394
    Dor1; Dor1-like family
Nucleotide Protein
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