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SGCD sarcoglycan delta [ Bubalus bubalis (water buffalo) ]

Gene ID: 102395222, updated on 10-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
See related
EnsemblRapid:ENSBALG00030009272
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 9
Exon count:
16
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 9 NC_059165.1 (43118019..44214806, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 9 NC_058351.1 (42578012..43673646, complement)

Chromosome 9 - NC_059165.1Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 1 Neighboring gene uncharacterized LOC112586855 Neighboring gene uncharacterized LOC123335024 Neighboring gene uncharacterized LOC112587038 Neighboring gene histone H4-like Neighboring gene 60S ribosomal protein L35a-like Neighboring gene uncharacterized LOC123335026 Neighboring gene uncharacterized LOC123466143

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059165.1 Reference NDDB_SH_1 Primary Assembly

    Range
    43118019..44214806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044947411.2 → XP_044803346.1  delta-sarcoglycan isoform X1

  2. XM_044947410.2 → XP_044803345.1  delta-sarcoglycan isoform X1

  3. XM_044947415.2 → XP_044803350.1  delta-sarcoglycan isoform X3

  4. XM_044947408.2 → XP_044803343.1  delta-sarcoglycan isoform X1

  5. XM_044947414.2 → XP_044803349.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_044947413.2 → XP_044803348.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  7. XM_044947412.2 → XP_044803347.1  delta-sarcoglycan isoform X2

    Related
    ENSBALP00030017170.1, ENSBALT00030025749.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  8. XM_025294017.3 → XP_025149802.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  9. XM_025294018.3 → XP_025149803.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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