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SC5D sterol-C5-desaturase [ Bubalus bubalis (water buffalo) ]

Gene ID: 102394495, updated on 10-Mar-2024

Summary

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Gene symbol
SC5D
Gene description
sterol-C5-desaturase
See related
EnsemblRapid:ENSBALG00030031886
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See SC5D in Genome Data Viewer
Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 16 NC_059172.1 (53534120..53546114, complement)
102 previous assembly NDDB_DH_1 (GCF_019923925.1) 16 NC_058358.1 (53266813..53278806, complement)

Chromosome 16 - NC_059172.1Genomic Context describing neighboring genes Neighboring gene sortilin related receptor 1 Neighboring gene uncharacterized LOC102394298 Neighboring gene 60S ribosomal protein L23a-like Neighboring gene tectorin alpha Neighboring gene uncharacterized LOC123329799

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lathosterol oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059172.1 Reference NDDB_SH_1 Primary Assembly

    Range
    53534120..53546114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006044882.3 → XP_006044944.1  lathosterol oxidase

    See identical proteins and their annotated locations for XP_006044944.1

    Related
    ENSBALP00030058472.1, ENSBALT00030088049.1
    Conserved Domains (1) summary
    COG3000
    Location:40 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

  2. XM_006044884.4 → XP_006044946.1  lathosterol oxidase

    See identical proteins and their annotated locations for XP_006044946.1

    Conserved Domains (1) summary
    COG3000
    Location:40 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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